The Neurophysiological Biomarker Toolbox (NBT)

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tutorial:tutorial_dipoles [2012/01/16 10:02]
gherrero
tutorial:tutorial_dipoles [2013/12/06 09:58] (current)
Klaus Linkenkaer-Hansen
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 ====== Tutorial: Simulating and estimating EEG sources ====== ====== Tutorial: Simulating and estimating EEG sources ======
 +
 +Approximate time needed to complete the tutorial: 2 hours.
  
 In this tutorial we will learn how simple intracerebral current sources can  In this tutorial we will learn how simple intracerebral current sources can 
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 the topic of this tutorial: the topic of this tutorial:
  
-{{http://www.kasku.org/tutorials/tutorial_dipoles/slides.pdf|Download the slides}}+[[http://sourceforge.net/projects/nbtoolbox/files/pdf/sourcemodel.pdf/download|Download the slides]]
  
  
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 Please download the  Please download the 
-{{http://www.kasku.org/tutorials/tutorial_dipoles/tutorial_dipoles.zip|tutorial files}}+[[http://sourceforge.net/projects/nbtoolbox/files/Tutorials/Scripts/tutorial_dipoles.zip/download|tutorial files]]
  and uncompress the .zip  file. Then simply add directory ''tutorial_dipoles'' and all its   and uncompress the .zip  file. Then simply add directory ''tutorial_dipoles'' and all its 
 subdirectories to your MATLAB's path. To add a directory and all its subdirectories to subdirectories to your MATLAB's path. To add a directory and all its subdirectories to
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 following freely available MATLAB toolboxes: following freely available MATLAB toolboxes:
  
-{{http://fieldtrip.fcdonders.nl/|Fieldtrip MATLAB toolbox}}+[[http://fieldtrip.fcdonders.nl/|Fieldtrip MATLAB toolbox]]
  
  
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 The tutorial makes use of  The tutorial makes use of 
-{{http://www.mathworks.nl/help/techdoc/matlab_oop/brh2rgw.html|MATLAB's classes}}+[[http://www.mathworks.nl/help/techdoc/matlab_oop/brh2rgw.html|MATLAB's classes]]
 Do not get get intimidated by the term. A class is just a //user-defined data type//. Do not get get intimidated by the term. A class is just a //user-defined data type//.
  MATLAB comes with lots of built-in data types. For instance ''double'' and ''single''  MATLAB comes with lots of built-in data types. For instance ''double'' and ''single''
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 One of the great advantages of using objects with MATLAB is that it allows you One of the great advantages of using objects with MATLAB is that it allows you
-to {{http://en.wikipedia.org/wiki/Function_overloading|overloading}}+to [[http://en.wikipedia.org/wiki/Function_overloading|overloading]]
  function names. For instance, if you run the   function names. For instance, if you run the 
 command: command:
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 built-in ''plot()'' instead of corresponding to method ''plot()'' of class  built-in ''plot()'' instead of corresponding to method ''plot()'' of class 
 ''mri.head''. Only if you read until the end of the help that is displayed you ''mri.head''. Only if you read until the end of the help that is displayed you
-will see a section that reads ''Overloaded methods:'' and that lists several+will see a section that reads ''Overloaded methods'' and that lists several
 other functions that are also called ''plot()'', and that will be called  other functions that are also called ''plot()'', and that will be called 
 instead of the built-in, depending on the type of the input argument.  instead of the built-in, depending on the type of the input argument. 
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 This tutorial has been prepared for the course  This tutorial has been prepared for the course 
 [[courses:advanced_human_neurophysiology|Advanced Human Neurophysiology]], [[courses:advanced_human_neurophysiology|Advanced Human Neurophysiology]],
- given at the {{http://www.vu.nl/en/|VU University}}, and organized by  + given at the [[http://www.vu.nl/en/|VU University]], and organized by  
-{{http://www.bio.vu.nl/enf/linkenkaer/|Klaus Linkenkaer-Hansen}}. The author of the tutorial is  +Klaus Linkenkaer-Hansen. The author of the tutorial is  
-{{http://www.kasku.org|German Gomez-Herrero}}+[[http://www.kasku.org|German Gomez-Herrero]]
  
 As both code and documentation has been made from scratch for the  As both code and documentation has been made from scratch for the 
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 so that I can improve it.  so that I can improve it. 
  
 +====== Tutorial steps ====== 
 +
 +The tutorial consists of three parts. Follow the links below to each of those parts:
 +
 +
 +  - [[tutorial:tutorial_dipoles:head_model|Building a realistic head model]]
 +  - [[tutorial:tutorial_dipoles:eeg_sources|Simulating EEG sources]]
 +  - [[tutorial:tutorial_dipoles:source_localization|Localizing EEG sources]]
  
tutorial/tutorial_dipoles.1326708171.txt.gz · Last modified: 2012/01/16 10:02 by gherrero
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